Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs28881586 chr14:24417982 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs2913252 chr5:75619467 C/T 9.76E-8 497 23.53 18.87 3.63 KM Plot
LGG rs2930891 chr19:883224 A/G 7.99E-5 496 20.82 25.83 20.37 KM Plot
LGG rs2930894 chr19:881161 A/G 2.46E-5 509 20.32 25.5 20.9 KM Plot
LGG rs2937738 chr5:75633515 C/A 9.99E-5 494 23.53 17.53 15.68 KM Plot
LGG rs3049857 chr14:24422778 C/CGCTTTGA 4.05E-5 507 23.63 21.3 15.53 KM Plot
LGG rs34007333 chr8:6184944 C/G 2.3E-5 498 22.12 23.93 7.72 KM Plot
LGG rs34080402 chr10:935086 T/TA 7.35E-8 506 21.85 24.37 14.15 KM Plot
LGG rs34251037 chr10:867884 C/T 3.92E-6 508 21.7 25.83 14.43 KM Plot
LGG rs34258758 chr7:20717257 C/G 1.32E-5 490 24.5 21.27 14.37 KM Plot
LGG rs34270014 chr10:904666 T/C 3.22E-8 506 21.83 24.5 14.15 KM Plot
LGG rs34284130 chr10:946244 A/G 3.37E-7 505 21.83 24.23 14.43 KM Plot
LGG rs34288681 chr7:127280847 TC/T 1.01E-5 507 21.6 26.77 12.4 KM Plot
LGG rs34318754 chr10:890714 G/A 3.91E-6 508 21.7 25.18 14.43 KM Plot
LGG rs34487581 chr10:897201 G/A 2.52E-7 504 21.7 25.83 14.15 KM Plot